Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs3772848 chr3:124568226 A/G 0.000139 285 25.93 26.38 16.47 KM Plot
KIRP rs3784140 chr14:69414378 C/T 3.54E-5 276 26.4 23.63 6.1 KM Plot
KIRP rs3786589 chr19:16526787 G/A 8.65E-5 283 26 20.9 12.1 KM Plot
KIRP rs3791173 chr17:80739038 C/A 7.38E-9 282 26.07 26 16.4 KM Plot
KIRP rs3792108 chr2:234184952 T/C 6.17E-5 288 25.08 26.77 23.23 KM Plot
KIRP rs3792109 chr2:234184417 G/A 0.000129 287 25.7 26.37 23.23 KM Plot
KIRP rs3792112 chr2:234176609 C/T 0.000161 284 25.5 27.12 25.57 KM Plot
KIRP rs3805009 chr3:4805489 A/G 6.88E-6 277 17.97 25.93 25.62 KM Plot
KIRP rs3806971 chr6:110798045 G/C 3.54E-5 281 19.4 22.57 26.4 KM Plot
KIRP rs3808996 chr11:124956298 C/T 1.16E-7 289 25.6 27.03 16.57 KM Plot
KIRP rs3809047 chr11:46367702 T/C 4.63E-10 284 25.93 25.63 10.6 KM Plot
KIRP rs3809672 chr16:1022650 C/T 2.54E-9 278 26.77 22.68 10.97 KM Plot
KIRP rs3816234 chr2:234185999 G/A 6.17E-5 288 25.08 26.77 23.23 KM Plot
KIRP rs382115 chr12:45330524 T/C 0.000102 289 20.27 28.17 24.67 KM Plot
KIRP rs3821536 chr3:124483952 T/C 0.000192 285 25.97 26.4 16.47 KM Plot